PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G01157
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 217aa    MW: 24851.8 Da    PI: 9.7496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G01157genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-173178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l +++  +G g W+++a+t g++Rt+k+c++rw++yl
       AA32G01157 31 KGPWTMEEDFILFNYIINHGEGLWNSVAKTSGLKRTGKSCRLRWLNYL 78
                     79********************************************97 PP

2Myb_DNA-binding54.82.2e-1784127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ +lG++ W++Ia++++ gRt++++k++w++
       AA32G01157  84 RGNITAEEQLLIIQLHDKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 127
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0682678IPR017930Myb domain
SuperFamilySSF466892.52E-2929125IPR009057Homeodomain-like
SMARTSM007173.1E-113080IPR001005SANT/Myb domain
PfamPF002492.8E-143178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-213285IPR009057Homeodomain-like
CDDcd001674.24E-83378No hitNo description
PROSITE profilePS5129424.62979133IPR017930Myb domain
SMARTSM007179.7E-1683131IPR001005SANT/Myb domain
PfamPF002496.7E-1684127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2486133IPR009057Homeodomain-like
CDDcd001677.33E-1288127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
METSTKKSVG RGKATTITSS RKEEEDTTVR KGPWTMEEDF ILFNYIINHG EGLWNSVAKT  60
SGLKRTGKSC RLRWLNYLRP DVRRGNITAE EQLLIIQLHD KLGNRWSKIA KHLPGRTDNE  120
IKNFWRTKIQ RHMKVVSSSS SANHNNNNNN IMNHHNCSRN SQGSEMTTEQ GSSSKAFDMA  180
EMTTATTSFT VDQSNDNYWN VEDLWPLQLL NADHPVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-263113127126MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485409.11e-110PREDICTED: transcription factor MYB57-like
SwissprotQ9SSA11e-109MYB57_ARATH; Transcription factor MYB57
TrEMBLD7L9N91e-109D7L9N9_ARALL; Predicted protein
STRINGAl_scaffold_0003_591e-109(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-102myb domain protein 57